CDS
| Accession Number | TCMCG007C59889 |
| gbkey | CDS |
| Protein Id | XP_033134749.1 |
| Location | join(45114662..45114760,45114833..45115133,45115230..45115367,45115459..45115850,45116001..45116114,45116204..45116332,45116410..45116604,45116693..45116887,45117000..45117137,45117227..45117349,45117427..45117680,45117778..45117881,45118075..45118169,45118256..45118480,45118770..45118946,45119026..45119098,45119207..45119274,45119406..45119551,45119641..45119749,45119841..45119987,45120068..45120115,45120175..45120303,45120423..45120656,45120727..45120864,45120950..45121032,45121128..45121233,45121498..45121593,45121724..45121876,45122059..45122223,45122301..45122527,45122623..45122725,45122811..45122939,45123026..45123070,45123264..45123458,45123768..45123894,45123972..45124072,45124354..45124491,45124556..45124651,45124909..45125055,45125140..45125271,45125370..45125417,45125507..45125653,45125719..45125780,45125949..45126102,45126208..45126399,45126494..45126598,45126691..45126825,45126948..45127148,45127231..45127485) |
| Gene | LOC103843826 |
| GeneID | 103843826 |
| Organism | Brassica rapa |
Protein
| Length | 2370aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA249065 |
| db_source | XM_033278858.1 |
| Definition | CCR4-NOT transcription complex subunit 1 isoform X4 [Brassica rapa] |
EGGNOG-MAPPER Annotation
| COG_category | K |
| Description | Domain of unknown function (DUF3819) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko03019 [VIEW IN KEGG] |
| KEGG_ko |
ko:K12604
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03018
[VIEW IN KEGG] map03018 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGCTGATGGTTCCGTCAAAGGTCGCCGGCCATACCCGGTTCTTGCTTGAGAGTTTTAATGGCTCCGATGTCGACTCAATCGCCCAAGAGATCTGTCAGTTGGTTGATGTTGGTATTGAGACAAGCATTCCAGCTCTCAAGACGTGCATAGATTGCTTCACCGTCCGGAGAAGCCATCCTAATGCGTTGCAGCTGGAGAAACTTGTATCCTTGGTCTTCAAACGTGTTTTGAACAACTCTGATAATCTCCAAACCCTGATTTCAAACGCACTCCAAGATGTGGAGCTCACTGACGAGTTTGTGGATGATTTGACGGATGCGTTGGGCTTTACAATCCCTGAGAAAATTAGCGTTTCTCTGGTCCTGGCCGATTCTGAAAGATCCGATGCAAAGTCAAGTGGACGAAACTTATTATTGGCCGAGATTGAGCAACTGTGTGCCTCTCCTGGCCAGATCGAGTCAACTGAGCAAATTCAGAATGTTGTTTTGTTTCTCCAGCATTCCGAGGACCTCTCCAGCCATTTGGATTCCTTCCTCCGTGCCCCTTTTCATCTCTTATTCCTTCCCAGTCCATATTGTGACTCTCAACGCTTTTCTCTTCCGCACAGTGATTCCTCTGACAACGACTTTGAGGCTATCCTAGATGATATCGACAAGGAACTTGATCTTGGAGATCTCATGGGTGAATTAGGTTGTGGTCTCACAGCTGATGCCCAGCAATGCAAAGAGATCTTGTCTACTTTCGCACCATTAGGAGAGGCTGCTATCGCCAGAATTCTTGGTAATGTTGCTCGTTCATGTCCTGATCGTGAAGATAATCACACCACCTTTCCAACATTCGCCCTGGCCCTTGGATGCTGCATTCCAACTGAACTTCCCACGCCAAGATCGTGGAATGCTGACATCTTAATTGAAACTATCATCCAGCTTGCTCCTGGCACAAGCTGGAGGAAAGTAATCGAGAATCTCGACCATAGTGGATTTGACATCCCTAATATGGAGTCTTTCTCGTTTTTCATGCGCCTATATAAAACTGCTTGCAAGGACCCATTTCCTCTGGATGCTGTATGCGCTTCTGTCTGGAAAAATATGGAAGGTCAATTATCCTTTCTTAAGCATGCCATAGCCGCCCCACCAGAAGTGTTCACCTTTACGCATTCTCCAAAGAAGCTGGTATATGTTGATAATAATATGCACAGCCATGAGCAACAATTAGGACTTTCCAATCAAGCTTGGCTATCTCTCGATCTCTTATATGTGTTATGCCAGCTGGCCGAGAGAGGTCATACTGTTTTAGTTAGTTCGCTGCTCCATTATCCACTCACACATTGTCCTAAAACCTTGCTTCTTGGAATGGCACACATCAAAACTGCCTATAATCTCATCCAGCGAGAGGTGCTTTCTGTTGTTTTCCCGCTGATAATAACGAATTCCCAGGATAGTGGTTTTATCCTTCATCTCTGGCATCAAAATGCTGAGCTCGTTCTGTGGGGGATTTTAAATGCCCAAAATCTTAAAGTAGACAGCATACTCAGAATAATTGAAATCTGCCATGAGCTCAAGATTCTCGCTGTTGTTTTAGAATCAGTTCCAGTCTCATTCAGCATCAGATTGGCAGCCCTTGCCTCACTGAGAGGATTTTTGGACATTGAGAACTGGCTGCCAAACTGTCTATATGTGTATAAGGACACCTTTGCTGTGGAGTGTCTCAAATTTGTCAAGAATGTGCATTTTAGCCAATCGGAGGATTTTACTTCCAAACATTTCCATCCGTCTGATCCTTTATCAGATCTTCATTTGGATGCAACAGCTTTGCTTTTGAAAGTTTTGAAAGCTCATGATAATGTGATTACTTCATCTCAACTGGTAGATGATATAGAAAAAGTCAATGCAGCAATCTTGGATTGTAATTCGAAACTGCAGAATGGCGAAGCTAAAGATTCATCAGCTTCCAATGCATATGGAGAAGATGTTGAGGCAGAAGCAAACGCTTATTTCCATCAAATGTTTTCTGGTCAGCTGAGTGTTGATGCTATGGTTCAAATGCTTTCCTTATACAAGGACTCTTTGGTTCAGAGGGAAAAATCAATTTTTGATTGCATGATTGCTAATCTATTTGAGGAATATCGTTTTTTCCCCAAGTATCCCGAGAGGCAGCTGAAAATAGCTTCCATTCTCTTTGGTTCTGTTATCAAGCACCAACTTATAAGCTCAATCACATTGGGTATGGCACTGCGTCTAGTCTTGGATTCTTTGCGTAAACCTGCAGATTCAAAAATGTTTCTCTTTGGAAGCAAAGCTCTGGAACAGTTTGTGAATCGTCTGGTTGAATTGCCTCAGTACTGCAACCATATTTTGCAAATATCTCATCTGCGTAGCACTCATCCCGAGTTAGTCACTGTTATTGAACAAGCACTTTCAAGGATATCATCTGGTAATTTAGAGTCAGATGCCTCTGTTTCGCACCCTGGTCTTTCACAGTCTTTCCCTGGAAACGGCGAGTTTGGTTCTGGAATTGGTCAATCTGCGTTGCAACTTCCTTCTCCTGTGCTGCCTCAACAGACTAATGAAGTGCATATTGATGACCGCAGCAGAGTACCAAGTGTTCCATCTAACGAAGCAAAGCCGCTTCTGCCGTCATCATCTAACATTTCCGTTGATGTTTCTGTCACTCCTAAGAATCCTGGCATTTCGACTTCTTCATCAACCTCAGCTGGTTTTGTTCGTCCAGCTCGTGGAGCCACTTCGACGAGGTTTGGCTCTGCTTTGAACATAGAAACCCTGGTTGCAGCAGCAGAGAGAAGGGAAAACGCAATAGAGGCTCCACCGTCAGATGTTCAGGACAAAATTTCATTCATAATCAATAATATATCTTTAGCCAACATTGAATCTAAAGGGAAAGATTTTGCTGAGATTTTACCTCAGCAGTACTATCCTTGGTTTGCACAGTATATGGTTATGAAAAGAGCAAGCATCGAGCCCAATTTTCATGATTTGTACTTAAAGTTCTTGGACAAAGTTGATTCCAAGCTGTTATTTAAGGAGATACTTCAAAATACTTACGAAAATTGCAGGGTTCTCTTGGGTTCAGAGCTCATAAAGTCAAGCTCGGAAGAGCGATCCCTGCTTAAAAATTTAGGCAGTTGGCTTGGAAAGTTGACCATTGGAAGGAATCATGTTTTAAGGGCGCGAGAAATAGATCCAAAATCCTTGATTGTGGAGGCATATGAAAAAGGGTTGATGATAGCAGTAATTCCATTCACTTCAAAGGTTCTTGAGCCATGCCAAAACAGTATTGCGTATCAGCCTCCCAATCCTTGGACGATGGCTATACTTGGGTTACTCGCTGAGATCTATTCAATGCCAAACCTAAAAATGAATCTGAAGTTTGATATAGAGGTTCTATTCAAGAACCTTGGTTGTGATTTGAAGGAAGTAGCGCCAACTTCCCTTCTAAAGGATCGGAAGAGAGAAATAGATGGAAATCCTGATTTTAGTAACAAAGATCTTGGAGTAACACATATATCTCAACCACCGATAATCCAGGAGCCTAAAACAATTTCTCCTCTTAAGCAAATAGACCTACCTATTGATGTAGCAAATACAGACACTCCCTCAAAGTTATTATCACAGTATGTAGCCCCACAACGTGTGTATACTAATACTTTGATGGAAGACGAAAAAGTGGCAACTTTAGGCTTGCCTGATCAGCTCCCGTCACCTCAAGGACTGTTCCCGTCAAGTCCATCCCCGTTGTTTTCTACTAGCCAGCCACCAGCGCTTCCCAACATTGGAAATCATGTGGTTATCAATCAGAAATTAAGCGGATTTGGTACGCACTTTCCATTTCCGAGAGTGGTACCACTTGCCATGGATAGAGCTATCAAAGAGATTGTGGCTGGTATTGTTCAGAGAAGTGTTTGCATTGCTTGCCAAACAACAAAAGAGCTTGTACTGAAGGATTATGCCTTGGAACCAGATGAGACACGTATATATAGTGCAGCTCACTTGATGGTAGCGAGTTTAGCTGGGAGTTTGGCTCATGTGACGTGCAAGGAACCCCTGCGCACTTCAATTTCAGGTCATCTGCGGAGCTTGTTTCAGGATCTGAATATTAAAAATGAAGCTCTTGAACAAATTGTGCAACTTGTGACCAATGACAACCTTGATCTGGGTTGTGCTGCCATTGAGCAGGCGGCTACAGAGAAGGCAGTACAAACTATCGACGCGGACATTGCCCAGCAGTTGTTGTTACGGAGAAAGCCCAGAGATGGTGCTGGATCCTCCTTATCGCAAAATTCTGTCAGTTTTATACCAGAGTCCCTCCGCCCCAAACCGGGACATCTGTCCCTGTCTCAACAGCGAGTTTATGAGGACTTTGTTCAACTTCCTTGGCAAAAGCAGTCAATCCACACTTCACACGGTTTATCTGCTGCTTCAAGCTCGTCTGGTGAGGTTGGGCTTGGTAGTAATTATGGTCCAGTATCAGGAAAAAGTGCTTCGGACTCTTTGTCTGGTGCTGAAAACGCTCGGATGGATATGGTCTCCCGGGCATCAGATCTTTCTGTGGAGGGTTTTGAATCTCCATTTGCACTTTTAAGCTCACAAGTTGATCCAGCTGGTGAAACAGGCGGTCTTCAGTTCTCTAATTCCATTTCGACTTCTGAGTTGAGCCTGGTTGAATCCTCCGACACTGCTATGAAAGAAACTGGAACATCATTGCAGACATTGACTTCAGCTGCTACCATGGAGCGTCTTGGTGGAAGTAATATCGCTCAGCCTTCTCTGTCCACGAGAGATGCACTGGATAAGTATCATATTGTTATGCAGAAGATGGAGGACTTAGTGGCTAATAATGCCGGAGATGGTGAAATTCAGGTTGTAGTTTCTGAAGTTCCTGAAATCATCCTCAGATGTATCAGCAGAGATGAAGCAGCTCTGGCTGTCGCTCAAAAAGCTTTCAAGGCTCTTTATGAGAATGCATCAAGTAGTCTTCACGTCAGTGCTAACCTAGCAATTCTTGTGGCTATTCGTGATGTTTGCAAGCGTGTGGTTAAAGAGCTAACTAGTTGGGTGATTTATTCAGAGGAGGAGCGGAAGCTCAACAAGGATATAACTATCGGGCTTATCCAACGCGAGTTGCTTAACCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAAGAGCGCCACTGACTTCTCTATTTCTCTGCTCCAATCCTTGGTCACTGAGGAGTCGAGTGTCATTTCAGAGCTACACACTCTTGTTGATGCACTGGCAAAGCTTTCCTCAAAATCCGGATCTCCTGAGTCATTGCAACAACTAATTGACATCATACGAAATCCAGTTACTAATACAAGTGGTCTCTCTGATAGTGCATCCGGAAACGAGAACAATGATAGACAATCGAAGGATGAAAAGCTTTGTTCTCAGGTTGTGTGCAATACAACTGCTAACACAGAAGAGAATACCAGCTGGGAATATGTGGTAGCAGATCCTGCGGGTTTCCGGAATCGGGTGTCCACGCTTTTTAAAAATTGGTATCAAATTTGCGAAGTTTCCGGTGCAAATGATACCGCTTGTTCACAATATGTCTTGCATTTGCATCAGACTGGACTACTTAAGGGAGATGATACAACAGAGAGTTTTTTCAGAATTCTTCTGGAACTCTCTGTCGCTCATTGTATATCTTCTGAAGAAATCAGTTCTGGAGCTGGGCAATCTCCTCAGCAAGCTCAGAGTCCATCATTCCTTATTATCGATATTTATGCAAAGCTGGTTTTTTCAGTATTGAAGTATTTCCCTGAACAGGAGTCTAGCATCAAGTTATTTCTTCTTTCGGAGATCATGGCTGTAACTGTGAGATCTATTCAGAAGGACGCAGAAGATAAAAAGACGTCACTCAATCCAAGACCATATTTTAGATTGTTCATTAACTGGCTGCTGGACTTATGTTCCCTGGATCCTGGGACTGATGGAGCAAACTTTCAGGTTCTAACAGCTTTTGCCAATGCATTCCACGCGTTGCAGCCTCTTAAGGTTCCCGCTTTCAGCTTTGCATGGCTAGAGCTGGTCAGCCACAGAAGCTTCATGCCTAAGATGCTTACAGTAAATGGCCAGAAGGGTTGGCCATATGTGCAACGCCTGCTGGTAGACTTGCTCCAGTTTCTTGAGCCATTTTTGAGAAATGCTGAACTCGGAGGACCAGTTAATTTCCTATACAAAGGGACATTGAGAGTGTTGCTGGTGCTGCTTCATGACTTCCCGGAGTTCCTCTGTGATTATCATTTTACTTTCTGTGATGTGATTCCTTCAAGTTGCATACAAATGCGAAATATTATTCTCAGTTCTTTTCCACGGAACATGAGGCTTCCAGATCCCTCTACCCCAAATTTGAAGATTGATTTACTGCCTGAGATAGTAGAAGCTCCATGTATCCTTTCCGAGGTTGATGCTGTGCTTAAAGCGAAGCAAATGAAGAATGACGTGGACGAGTATCTCACTTTGAGGCAACAGAATTCAACTTTCCTAAGTGAGTTGAAGCAGAAGCTGCTTCTCTCGTCCAACGAGGCCAGCTCAGCTGGAACCCGTTACAATGTACCATTGATCAACTCGCTTGTGCTATATACTGGAATGCAGGCTATTCAGCAGCTACAAGCGGGTGAGACGCAGGCTCAAAATGTGGTGGCCTTGCACATGTTCAAGTATTTAAGTATGGAACTAGATACAGAAGGGCGCTACTTGTTCCTCAACGCGATCGCCAATCAGCTTCGATATCCCAACAACCACACTCATTATTTCTCCTTCATCATGCTCTATCTCTTCTTCGAGTCTAACCAGGAGATCATTATACAGGAGCAGATAACAAGAGTGTTGTTGGAAAGGCTAATTGTGAACCGGCCGCATCCTTGGGGACTCCTAATAACGTTCATCGAGCTCATCAAGAATCCAAGATATGGCTTCTGGCAACATGCCTTCATCAGGTGTGCTCCTGAGATTGAAAAGCTCTTTGAATCGGTCGCTAGATCCTGTGGTAGTCTCAAGCCAGTAGTTGACGAGGGAATGGTCTCCGGTTGGGCCGACAACAATCACTAG |
| Protein: MLMVPSKVAGHTRFLLESFNGSDVDSIAQEICQLVDVGIETSIPALKTCIDCFTVRRSHPNALQLEKLVSLVFKRVLNNSDNLQTLISNALQDVELTDEFVDDLTDALGFTIPEKISVSLVLADSERSDAKSSGRNLLLAEIEQLCASPGQIESTEQIQNVVLFLQHSEDLSSHLDSFLRAPFHLLFLPSPYCDSQRFSLPHSDSSDNDFEAILDDIDKELDLGDLMGELGCGLTADAQQCKEILSTFAPLGEAAIARILGNVARSCPDREDNHTTFPTFALALGCCIPTELPTPRSWNADILIETIIQLAPGTSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAVCASVWKNMEGQLSFLKHAIAAPPEVFTFTHSPKKLVYVDNNMHSHEQQLGLSNQAWLSLDLLYVLCQLAERGHTVLVSSLLHYPLTHCPKTLLLGMAHIKTAYNLIQREVLSVVFPLIITNSQDSGFILHLWHQNAELVLWGILNAQNLKVDSILRIIEICHELKILAVVLESVPVSFSIRLAALASLRGFLDIENWLPNCLYVYKDTFAVECLKFVKNVHFSQSEDFTSKHFHPSDPLSDLHLDATALLLKVLKAHDNVITSSQLVDDIEKVNAAILDCNSKLQNGEAKDSSASNAYGEDVEAEANAYFHQMFSGQLSVDAMVQMLSLYKDSLVQREKSIFDCMIANLFEEYRFFPKYPERQLKIASILFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGLSQSFPGNGEFGSGIGQSALQLPSPVLPQQTNEVHIDDRSRVPSVPSNEAKPLLPSSSNISVDVSVTPKNPGISTSSSTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINNISLANIESKGKDFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEILQNTYENCRVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGCDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPPIIQEPKTISPLKQIDLPIDVANTDTPSKLLSQYVAPQRVYTNTLMEDEKVATLGLPDQLPSPQGLFPSSPSPLFSTSQPPALPNIGNHVVINQKLSGFGTHFPFPRVVPLAMDRAIKEIVAGIVQRSVCIACQTTKELVLKDYALEPDETRIYSAAHLMVASLAGSLAHVTCKEPLRTSISGHLRSLFQDLNIKNEALEQIVQLVTNDNLDLGCAAIEQAATEKAVQTIDADIAQQLLLRRKPRDGAGSSLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQSIHTSHGLSAASSSSGEVGLGSNYGPVSGKSASDSLSGAENARMDMVSRASDLSVEGFESPFALLSSQVDPAGETGGLQFSNSISTSELSLVESSDTAMKETGTSLQTLTSAATMERLGGSNIAQPSLSTRDALDKYHIVMQKMEDLVANNAGDGEIQVVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSSLHVSANLAILVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRNKSATDFSISLLQSLVTEESSVISELHTLVDALAKLSSKSGSPESLQQLIDIIRNPVTNTSGLSDSASGNENNDRQSKDEKLCSQVVCNTTANTEENTSWEYVVADPAGFRNRVSTLFKNWYQICEVSGANDTACSQYVLHLHQTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAGQSPQQAQSPSFLIIDIYAKLVFSVLKYFPEQESSIKLFLLSEIMAVTVRSIQKDAEDKKTSLNPRPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAVLKAKQMKNDVDEYLTLRQQNSTFLSELKQKLLLSSNEASSAGTRYNVPLINSLVLYTGMQAIQQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESNQEIIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWQHAFIRCAPEIEKLFESVARSCGSLKPVVDEGMVSGWADNNH |